how does this translate in 2D?
It's still not clear what you want to do.That is, assuming you don't mean "translate" as a term for displacement, "translate" is not a mathematical term in the above context, because it's more than just the math. It appears that the paper also involves physics and behavior in 3D.
So, if you're interested in modeling the 3D fluid dynamics described in 2D, there would be more to that than, for instance, changing 3D vectors to 2D, or setting z=0 everywhere. As mentioned, it's likely that, in the paper you're studying, there are assumptions about the laws of physics, boundary conditions, motion constraints, etc., that you would have to redefine for a 2D case, to ensure the results remain in a plane. Even then, you'll have to decide if you're interested in just adding constraints to the 3D world to confine behavior to 2D, or whether you want to model a true 2D world of some sort.
Again, if you're interested in 2D fluid dynamics, you may want to google for "fluid dynamics 2D" or the like.